A collection of research publications and academic contributions.
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Automated classification of cellular expression in multiplexed imaging data with Nimbus
Josef Lorenz Rumberger, Noah F. Greenwald, Jolene S. Ranek, Potchara Boonrat, Cameron Walker, Jannik Franzen, Sricharan Reddy Varra, Alex Kong, Cameron Sowers, Candace C. Liu et al.
Nature Methods 2025 -
CellFuse Enables Multi-modal Integration of Single-cell and Spatial Proteomics data
Abhishek Koladiya, Zinaida Good, Sricharan Reddy Varra, Sean C Bendall, Kara L. Davis
bioRxiv 2025 -
Multi-omic landscape of human gliomas from diagnosis to treatment and recurrence
Hadeesha Piyadasa, Benjamin Oberlton, Mikaela Ribi, Jolene S. Ranek, Inna Averbukh, Ke Leow, Meelad Amouzgar, Candace C. Liu, Noah F. Greenwald, Erin F. McCaffrey et al.
bioRxiv 2025 -
Temporal and spatial composition of the tumor microenvironment predicts response to immune checkpoint inhibition
Noah F. Greenwald, Iris Nederlof, Cameron Sowers, Daisy Yi Ding, Seongyeol Park, Alex Kong, Kathleen E. Houlahan, Sricharan Reddy Varra, Manon de Graaf, Veerle Geurts et al.
bioRxiv 2025
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Rapid Setup of Tissue Microarray and Tiled Area Imaging on the Multiplexed Ion Beam Imaging Microscope using the Tile/SED/Array Interface
Hadeesha Piyadasa, Benjamin Oberlton, Alex Kong, Christine Camacho Fullaway, Sricharan Reddy Varra, Cameron Sowers, Albert G Tsai
Journal of Visualized Experiments 2023 -
Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering
Candace C. Liu, Noah F. Greenwald, Alex Kong, Erin F. McCaffrey, Ke Xuan Leow, Dunja Mrdjen, Bryan J. Cannon, Josef Lorenz Rumberger, Sricharan Reddy Varra, Michael Angelo
Nature Communications 2023 -
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)
Sanjay Jain, Liming Pei, Jeffrey M. Spraggins, Michael Angelo, James P. Carson, Nils Gehlenborg, Fiona Ginty, Joana P. Gonçalves, James S. Hagood, John W. Hickey et al.
Nature Cell Biology 2023