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Hello
My name is Sri Varra. I'm a Research Software Engineer specializing developing opensource tools for analyzing multiplexed single cell imaging, with a focus on making large-scale datasets more accessible and interpretable. I typically write Python and am learning Rust and TypeScript.
Open Source Software
- Ark Analysis : An Integrated pipeline for multiplexed image analysis
- Toffy : A package and workflow for extracting and preprocessing Multiplexed Imaging data from the commercial MIBIScope
- MIBI Bin Tools : Tools for extracting TIFF images from the commercial MIBIScope's generated bin files
- Annsel : A package which implements DataFrame style operations for AnnData; featuring filtering, selection and groupbys
Find me on