Hi

I'm a Research Software Engineer and Data Analyst specializing developing opensource tools for single cell data analysis.

Open Source Software

Spatial Proteomics

• Ark Analysis : An Integrated pipeline for Multiplexed Imaging single cell analysis
• Toffy : A package and workflow for extracting and preprocessing Multiplexed Imaging data generated by the commercial MIBIScope
• MIBI Bin Tools : Tools for extracting Field of View images from the binary output files generated by the commercial MIBIScope

General Purpose Single Cell Analysis Tools

• Annsel : An extension for AnnData to perform familiar DataFrame operations like filter, select, and groupby